Churros

Churros is a Docker-based epigenomics analysis pipeline. While Churros mainly focuses on the ChIP-seq analysis, it can also handle CUT&TAG, ATAC-seq and DNA methylation data.

Contents:

• 1. Installation
• 2. Quick start (ChIP-seq, human)
• 3. Step-by-step analysis (ChIP-seq, human)
• 4. Large-scale profile analysis
• 5. Tutorial (ChIP-seq, S. serevisiae)
• 6. DNA methylation analysis by Churros
• 7. Commands in Churros
• 8. Appendix

Citation:

• Wang J, Nakato R, Churros: a Docker-based pipeline for large-scale epigenomic analysis, DNA Research, 2023. doi: 10.1093/dnares/dsad026